VDJServer Software Versions

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VDJServer incorporates a number of software tools. Here is the list of that software, the version being used and links for additional information.

VDJServer Release 1.0.3

  • pRESTO version 0.5.2
  • IgBlast version 1.4.0
    • Source Code
    • Agave apps: igblast-ls5-1.4u3, igblast-stampede-1.4u3
  • VDJML version 1.0.0
  • RepSum version 1.0.1
    • Source Repository
    • Agave apps: igblast-ls5-1.4u3, igblast-stampede-1.4u3, repcalc-ls5-1.0u3, repcalc-stampede-1.0u3
  • Change-O (changeset: 453:446d2032f41f, based upon version 0.3.3)
    • Source Repository
    • Agave apps: igblast-ls5-1.4u3, igblast-stampede-1.4u3, repcalc-ls5-1.0u3, repcalc-stampede-1.0u3
  • Alakazam version 0.2.5
  • Shazam 0.1.4

VDJServer Release 1.0.0

  • pRESTO version 0.5.2
  • IgBlast version 1.4.0
    • Source Code
    • Agave apps: igblast-ls5-1.4.0u16, igblast-stampede-1.4.0u10
  • VDJML version 1.0.0
  • RepSum version 1.0.0
    • Source Repository
    • Agave apps: igblast-ls5-1.4.0u16, igblast-stampede-1.4.0u10, repcalc-ls5-1.0.0u4, repcalc-stampede-1.0.0u3
  • Change-O (changeset: 453:446d2032f41f, based upon version 0.3.3)
    • Source Repository
    • Agave apps: igblast-ls5-1.4.0u16, igblast-stampede-1.4.0u10, repcalc-ls5-1.0.0u4, repcalc-stampede-1.0.0u3
  • Alakazam version 0.2.5
  • Shazam 0.1.4

VDJServer Release 0.11.0

  • pRESTO version 0.5.2
  • IgBlast version 1.4.0
    • Source Code
    • Agave apps: igblast-ls5-1.4.0u10, igblast-stampede-1.4.0u8
  • VDJML version 1.0.0
  • rep_char version 0.95.0

VDJServer Release 0.10.0

  • IgBlast version 1.4.0
    • Source Code
    • Agave apps: igblast-ls5-1.4.0u9, igblast-stampede-1.4.0u6
  • VDJML version 0.1.4
  • rep_char version 0.95.0

VDJServer Release 0.9.0

  • IgBlast version 1.4.0
    • Source Code
    • Agave apps: igblast-ls5-1.4.0u4, igblast-stampede-1.4.0u2
  • VDJML version 0.1.4
  • rep_char version 0.94.0